National Supercomputer Centre at Linköping University

  1. NSC Express
  2. Current NAISS, SNIC and LiU Projects at NSC
  3. Berzelius-2024-37
Basecalling and methylation analysis of nanopore data
Title: Basecalling and methylation analysis of nanopore data
DNr: Berzelius-2024-37
Project Type: LiU Berzelius
Principal Investigator: Ola Wallerman <ola.wallerman@scilifelab.uu.se>
Affiliation: Uppsala universitet
Duration: 2024-02-02 – 2024-09-01
Classification: 10610
Homepage: https://lindbladtohlab.org
Keywords:

Abstract

We have generated nanopore data from several species and would like to use the A100 GPUs to update base- and metylation calls as well as train species specific basecalling models.