Quantum chemical studies of biochemical reaction mechanisms
Title: Quantum chemical studies of biochemical reaction mechanisms
SNIC Project: SNIC 2013/1-321
Project Type: SNAC Medium
Principal Investigator: Margareta Blomberg <mb@organ.su.se>
Affiliation: Stockholm University
Duration: 2013-12-20 – 2015-01-01
Classification: 10407


The general goal of my research is to elucidate enzyme mechanisms, in particular for redox active enzymes containing transition metals. For this purpose quantum chemical methods (Density Functional Theory, DFT) are used to study biochemical model systems. Our group is world leading in this field, and our approach to quantum biomodeling is generally adopted as an important tool, as can be seen from the large number of citations (463) of an early (2000) description of this approach. My main project concerns mechanisms for reduction of molecular oxygen and proton pumping in cytochrome c oxidase (CcO), the terminal enzyme in the respiratory chain where oxygen is reduced to water. We have suggested a gating mechanism for proton pumping against the gradient, which can explain many important experimental observations, and which is now further developed based on continued DFT calculations on larger and better models. Another enzyme of particular interest is nitric oxide reductase (NOR), since it has large similarities to cytochrome c oxidase. The first crystal structure of this enzyme was solved in 2010. Based on DFT calculations on the active site taken from the crystal structure, we have suggested a reaction mechanisms of NOR, which also can explain why this enzyme is non-electrogenic. One important remaining question is to elucidate if NOR from different species have different electrogenic propeties.